Difference between revisions of "PracticalInferenceSchedule"
Peter Beerli (talk | contribs) |
Peter Beerli (talk | contribs) |
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| Line 8: | Line 8: | ||
* Week 2 | * Week 2 | ||
| − | ** 8/31 Structure | + | ** 8/31 Structure and Structurama |
| − | ** [out of town] Read up about the | + | ** [out of town] Read up about the methods |
* Week 3 | * Week 3 | ||
| Line 15: | Line 15: | ||
** 9/9 Tutorial of Structure | ** 9/9 Tutorial of Structure | ||
| − | 4 | + | * Week 4 |
| − | + | ** 9/14 dadi and eigensoft | |
| − | + | ** 9/16 Tutorial on dadi | |
| − | + | ||
| − | 5 | + | * Week 5 |
| − | + | ** 9/21 treemix | |
| − | + | ** 9/23 Tutorial | |
| − | + | ||
| − | 6 | + | * Week 6 |
| − | + | ** 9/28 BAPS, TESS, Geneland | |
| − | + | ** 9/30 Tutorial | |
| − | + | ||
| − | 7 | + | * Week 7 |
| − | + | ** 10/5 Sate, Pasta, ... | |
| − | + | ** 10/7 Tutorial | |
| − | + | ||
| − | 8 | + | * Week 8 |
| − | + | ** 10/12 Rev-Bayes | |
| − | + | ** 10/14 Tutorial | |
| − | + | ||
| − | 9 | + | * Week 9 |
| − | + | ** 10/19 [out of town] Read articles about BEAST | |
| − | + | ** 10/21 BEAST Skyline (single locus) Methods and Tutorial | |
| − | + | ||
| − | 10 | + | * Week 10 |
| − | + | ** 10/26 Beast SNAPP and SVDquartet | |
| − | + | ** 10/28 Tutorial | |
| − | + | ||
| − | 11 | + | * Week 11 |
| − | + | ** 11/2 IMa | |
| − | + | ** 11/4 Tutorial of IMa | |
| − | + | ||
| − | 12 | + | * Week 12 |
| − | + | ** 11/9 Migrate | |
| − | + | ** 11/11 [out of town] Run the Migrate tutorial (we want to write a report that compares migrate and IMa results) | |
| − | + | ||
| − | 13 | + | * Week 13 |
| − | + | ** 11/16 [out of town] write a short report about the migrate-ima comparison | |
| − | + | ** 11/18 fastsimcoal2, method and tutorial | |
| − | + | ||
| − | 14 | + | * Week 14 |
| − | + | ** 11/23 Discussion about ABC methods on general (fastsimcoal2 msBayes etc) | |
| − | + | ** 11/25 Thanksgiving Holiday | |
| − | + | ||
| − | 15 | + | * Week 15 |
| − | + | ** 11/30 angsd | |
| − | + | ** 12/2 Tutorial for angsd | |
| − | |||
| − | |||
| − | |||
Revision as of 05:30, 25 August 2015
Schedule
- Week 1
- 8/24 Intro and organisation
- 8/26 Genepop/Isolation by distance/FST, short introduction about the methods and tutorial
- Week 2
- 8/31 Structure and Structurama
- [out of town] Read up about the methods
- Week 3
- 9/7 Labor day no class
- 9/9 Tutorial of Structure
- Week 4
- 9/14 dadi and eigensoft
- 9/16 Tutorial on dadi
- Week 5
- 9/21 treemix
- 9/23 Tutorial
- Week 6
- 9/28 BAPS, TESS, Geneland
- 9/30 Tutorial
- Week 7
- 10/5 Sate, Pasta, ...
- 10/7 Tutorial
- Week 8
- 10/12 Rev-Bayes
- 10/14 Tutorial
- Week 9
- 10/19 [out of town] Read articles about BEAST
- 10/21 BEAST Skyline (single locus) Methods and Tutorial
- Week 10
- 10/26 Beast SNAPP and SVDquartet
- 10/28 Tutorial
- Week 11
- 11/2 IMa
- 11/4 Tutorial of IMa
- Week 12
- 11/9 Migrate
- 11/11 [out of town] Run the Migrate tutorial (we want to write a report that compares migrate and IMa results)
- Week 13
- 11/16 [out of town] write a short report about the migrate-ima comparison
- 11/18 fastsimcoal2, method and tutorial
- Week 14
- 11/23 Discussion about ABC methods on general (fastsimcoal2 msBayes etc)
- 11/25 Thanksgiving Holiday
- Week 15
- 11/30 angsd
- 12/2 Tutorial for angsd
