Difference between revisions of "ISC-5317"
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| − | Advanced computational methods are becoming increasingly important in biology. A wide range of applications — including, for instance, identifying pathogens, tracing viral transmission pathways, and reconstructing the geographic expansion of humans out of Africa — rely on evolutionary inference. This course will cover the methods currently used for evolutionary inference, the stochastic models and inference principles they are based on, and how they are implemented in practice. | + | <span> <p>Advanced computational methods are becoming increasingly important in biology. A wide range of applications — including, for instance, identifying pathogens, tracing viral transmission pathways, and reconstructing the geographic expansion of humans out of Africa — rely on evolutionary inference. This course will cover the methods currently used for evolutionary inference, the stochastic models and inference principles they are based on, and how they are implemented in practice. </p></span> |
| − | In a separate lab-session we will learn python and apply it to understand phylogenetic trees and mutation models. | + | <!-- In a separate lab-session we will learn python and apply it to understand phylogenetic trees and mutation models. --> |
| + | <br> | ||
| + | '''We meet in room 150 in Dirac | ||
| + | '''<br> | ||
| + | == Current class notes == | ||
| + | <span><p> | ||
| + | * [[Syllabus]] | ||
| + | <!-- *Last lecture and notes: [http://peterbeerli.com/classdata/ISC5317/091917_besttree.pdf 091917_bestree.pdf], [http://peterbeerli.com/classdata/ISC5317/091917_notes.pdf 091917-besttree_notes.pdf] | ||
| + | *Last lecture and notes: [http://peterbeerli.com/classdata/ISC5317/092117_mutation1.pdf 092117_mutation1.pdf], [http://peterbeerli.com/classdata/ISC5317/092117_notes.pdf 092117_notes.pdf] | ||
| + | *Last lecture and notes: [http://peterbeerli.com/classdata/ISC5317/092617_mutation2.pdf 092617_mutation2.pdf], [http://peterbeerli.com/classdata/ISC5317/092617_notes.pdf 092617_notes.pdf] | ||
| + | *Last lecture and notes: [http://peterbeerli.com/classdata/ISC5317/092817_likehandout.pdf 092817_likehandout.pdf], [http://peterbeerli.com/classdata/ISC5317/092817_notes.pdf 092817_notes.pdf] | ||
| + | *Last lecture and notes: [http://peterbeerli.com/classdata/ISC5317/092817_likehandout.pdf 092817_likehandout.pdf], [http://peterbeerli.com/classdata/ISC5317/100317_notes.pdf 100317_notes.pdf] - | ||
| + | *Last lecture and notes: [http://peterbeerli.com/classdata/ISC5317/100517_bayeshandout.pdf 100517_bayeshandout.pdf], [http://peterbeerli.com/classdata/ISC5317/100517_notes.pdf 100517_notes.pdf] | ||
| + | *Current lecture and notes: Same as last lecture notes (continue) | ||
| + | *Last few lecture: [http://peterbeerli.com/classdata/ISC5317/coalescence1.pdf coalescence1.pdf] , | ||
| + | [http://peterbeerli.com/classdata/ISC5317/coalescence2.pdf coalescence2.pdf] | ||
| + | *Current lecture: [http://peterbeerli.com/classdata/ISC5317/Laura_Kubatko_speciestree_mbl2017.pdf Laura_Kubatko_speciestree_mbl2017.pdf] | ||
| + | *Last three lectures: [http://peterbeerli.com/classdata/ISC5317/Laura_Kubatko_speciestree_mbl2017.pdf Laura_Kubatko_speciestree_mbl2017.pdf], [http://peterbeerli.com/classdata/ISC5317/modelselection.pdf modelselection.pdf], [http://peterbeerli.com/classdata/ISC5317/bootstrap.pdf bootstrap.pdf], [http://phylo.bio.ku.edu/mephytis/boot-sample.html Mark Holder's bootstrap example] --> | ||
| + | |||
| + | <!-- [http://peterbeerli.com/classdata/ISC5317/100517_bayeshandout.pdf 100517_bayeshandout.pdf], [http://peterbeerli.com/classdata/ISC5317/100517_notes.pdf 100517_notes.pdf] --> | ||
| + | * [http://peterbeerli.com/classdata/ISC5317 Lectures] | ||
| + | <!-- * [http://peterbeerli.com/classdata/ISC5317/assignments Assignments] --> | ||
| + | * [http://peterbeerli.com/classdata/ISC5317/codes Codes] | ||
| + | * [[Heroes]] | ||
| + | </p></span> | ||
| + | |||
| + | == Old class notes == | ||
| + | * [[Reading]] | ||
| + | * [http://people.sc.fsu.edu/~pbeerli/classes/ISC5317/ISC5317/Lectures.html Lectures] | ||
Latest revision as of 16:03, 27 August 2024
Advanced computational methods are becoming increasingly important in biology. A wide range of applications — including, for instance, identifying pathogens, tracing viral transmission pathways, and reconstructing the geographic expansion of humans out of Africa — rely on evolutionary inference. This course will cover the methods currently used for evolutionary inference, the stochastic models and inference principles they are based on, and how they are implemented in practice.
We meet in room 150 in Dirac
Current class notes
