Difference between revisions of "ExposedPrograms"
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'''[[RevBayesTheory | Theory]] [[RevBayesTutorial | Tutorial]]''' | '''[[RevBayesTheory | Theory]] [[RevBayesTutorial | Tutorial]]''' | ||
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| + | === BEAST 1.8 Skyline === | ||
| + | Beast is a versatile package to analyze phylogenies population expansion and plots of parameters through time. | ||
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| + | '''[[BeastTheory | Theory]] [[BeastSkyTutorial | Tutorial]]''' | ||
Revision as of 09:13, 21 October 2015
Contents
Description of programs and tutorials
Here, you can find the programs we discussed, having a short summary about the programs and their inner working and a short tutorial of the program.
Genepop
Genepop on the Web and Genepop Software This software calculates standard population genetic quantities, such as FST, isolation by distance measures etc.
Theory; Tutorial material: download GENEPOP_TUTORIAL.ZIP
Structure
The program Structure (download website uses genotpyic data to assign individuals to populations probabilistically.
Theory Tutorial Example Report
Dadi
The program dadi (download website uses the site frequency spectrum to evaluate complex population models, up to three populations.
Treemix
The program treemix download website
Geneland
The program Geneland (it is an R package an can be installed from any CRAN site - see instructions)
Sate
The program Sate estimates a phylogenetic tree and aligns sequences at the same time.
RevBayes
RevBayes is a very versatile Bayesian inference system geared towards phylogenetic analysis. It has an R-like interface with its own language Rev.
BEAST 1.8 Skyline
Beast is a versatile package to analyze phylogenies population expansion and plots of parameters through time.
