Networks in Epidemiology
Haleh Askhi developed simulation methods for dynamic networks in epidemics that allows fast simulations of epidemics on complex, changing contact networks. Manuscript is on the last 10% stretch.
Current work snippets.
Estimation of contact networks using HMM
Haleh Ashki developed a method to use the genetic information of the pathogen to select among candidate contact networks of the host. Manuscript almost finished.
Taking into account sequencing error
Kyle Shaw extends currently work of Justin Bricker integrating sequencing errors with the Poisson-indel process. We will have by July a working test version (Peter will present a poster at the SMBE 2017 meeting in Austin.)
New divergence estimation method
Peter is working on the finishing touches of a new divergence method, developed by Michal, Haleh, and Peter
